SpotNet is a training dataset for a deep learning model for spot detection published in Laubscher et al. 2023.

This dataset is licensed under a modified Apache license for non-commercial academic use only.

The dataset can be accessed using deepcell.datasets with a DeepCell API key.

For more information about using a DeepCell API key, please see DeepCell API Key.

Each batch of the dataset contains two components:

  • X: raw images of fluorescent spots

  • y: coordinate annotations for spot locations

from deepcell.datasets import SpotNet

spotnet = SpotNet(version='1.0')
X_val, y_val = spotnet.load_data(split='val')

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