deepcell API

• deepcell.applications
  • Application
    • Application
      • Application._batch_predict()
      • Application._format_model_output()
      • Application._postprocess()
      • Application._predict_segmentation()
      • Application._preprocess()
      • Application._resize_input()
      • Application._resize_output()
      • Application._run_model()
      • Application._tile_input()
      • Application._untile_output()
      • Application.predict()
  • CytoplasmSegmentation
    • CytoplasmSegmentation
      • CytoplasmSegmentation.dataset_metadata
      • CytoplasmSegmentation.model_metadata
      • CytoplasmSegmentation.predict()
  • NuclearSegmentation
    • NuclearSegmentation
      • NuclearSegmentation.dataset_metadata
      • NuclearSegmentation.model_metadata
      • NuclearSegmentation.predict()
  • Mesmer
    • Mesmer
      • Mesmer.dataset_metadata
      • Mesmer.model_metadata
      • Mesmer.predict()
  • CellTracking
    • CellTracking
      • CellTracking.dataset_metadata
      • CellTracking.model_metadata
      • CellTracking.predict()
      • CellTracking.track()
  • LabelDetectionModel
    • LabelDetectionModel()
  • ScaleDetectionModel
    • ScaleDetectionModel()
• deepcell.datasets
  • deepcell.datasets.dynamic_nuclear_net
  • deepcell.datasets.tissue_net
  • deepcell.datasets.spot_net
  • Module contents
• deepcell.image_generators
  • fully_convolutional
  • sample
  • scale
  • tracking
• deepcell.layers
  • location
    • Location2D
      • Location2D.call()
      • Location2D.compute_output_shape()
      • Location2D.get_config()
    • Location3D
      • Location3D.call()
      • Location3D.compute_output_shape()
      • Location3D.get_config()
  • normalization
    • ImageNormalization2D
      • ImageNormalization2D.build()
      • ImageNormalization2D.call()
      • ImageNormalization2D.compute_output_shape()
      • ImageNormalization2D.get_config()
    • ImageNormalization3D
      • ImageNormalization3D.build()
      • ImageNormalization3D.call()
      • ImageNormalization3D.compute_output_shape()
      • ImageNormalization3D.get_config()
  • padding
    • ReflectionPadding2D
      • ReflectionPadding2D.call()
    • ReflectionPadding3D
      • ReflectionPadding3D.call()
  • pooling
    • DilatedMaxPool2D
      • DilatedMaxPool2D.call()
      • DilatedMaxPool2D.compute_output_shape()
      • DilatedMaxPool2D.get_config()
    • DilatedMaxPool3D
      • DilatedMaxPool3D.call()
      • DilatedMaxPool3D.compute_output_shape()
      • DilatedMaxPool3D.get_config()
  • tensor_product
    • TensorProduct
      • TensorProduct.build()
      • TensorProduct.call()
      • TensorProduct.compute_output_shape()
      • TensorProduct.get_config()
  • upsample
    • UpsampleLike
      • UpsampleLike.call()
      • UpsampleLike.compute_output_shape()
      • UpsampleLike.get_config()
      • UpsampleLike.resize_volumes()
• deepcell.losses
• deepcell.metrics
• deepcell.model_zoo
  • FeatureNet
  • PanOpticNet
  • FPN
  • Tracking
• deepcell.running
• deepcell.tracking
• deepcell.training
• deepcell.utils
  • backbone_utils
    • featurenet_3D_backbone()
    • featurenet_3D_block()
    • featurenet_backbone()
    • featurenet_block()
    • get_backbone()
  • data_utils
    • get_data()
    • get_max_sample_num_list()
    • relabel_movie()
    • reshape_matrix()
    • reshape_movie()
    • sample_label_matrix()
    • sample_label_movie()
    • trim_padding()
  • export_utils
    • export_model()
    • export_model_to_tflite()
  • io_utils
    • get_image()
    • save_model_output()
  • misc_utils
    • get_sorted_keys()
    • sorted_nicely()
  • plot_utils
    • cf()
    • create_rgb_image()
    • get_js_video()
    • make_outline_overlay()
    • plot_error()
    • plot_training_data_2d()
    • plot_training_data_3d()
  • tracking_utils
  • train_utils
    • count_gpus()
    • get_callbacks()
    • rate_scheduler()
  • transform_utils
    • inner_distance_transform_2d()
    • inner_distance_transform_3d()
    • inner_distance_transform_movie()
    • outer_distance_transform_2d()
    • outer_distance_transform_3d()
    • outer_distance_transform_movie()
    • pixelwise_transform()